Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VDFITYIIDFILHIDQHLVEIINNFGIWTYIILFLIVFIETGLVVFPFLPGDSLLFAAGALSVLDGSILHIVPLIITLWLAAVLGDTVNYHIGKKIGTSIPEDSWFGKLINKEKMEKAEAFFNKHGGKTIFIARFMPFIRTFAPFVAGASRMNYRYFLNYNILGATVWVLLCTLAGYFFGNFPIVKDNFSLVVIGIIVVSVIPMVVSFIKSKMDKKSAE |
4PVZ Chain:C ((3-37)) | -----------------------------------------------------------------------------------------------LGSTNKRKREQISTDNEAKMQIQEEKSPKKKRKKR----------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4PVZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 5027 for 112 contacts (44.9/contact) +
2D Compatibility (PS) -3583 + (NN) -77 + (LL) 16404
1D Compatibility (HY) 2400 + (ID) 350
Total energy: 19821.0 ( 176.97 by residue)
QMean score : 0.412
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