Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRGQEEIDKEQYQVLFIKERLIPCVLGAVIGDCLGVPVEFKDR-EYLKQNPIVEMI-GYGTYNQPKGTWSDDSSLTFALMESLISG--YDINRIVNNMVSFMDDGFWTPYGEVFDIGSVTRESLNRYKNGVSVFECGGKDNFDNGNGAIMRIMPLVFY-LGKDFSFGKKNKITEEVTRITHAHPRSILGSYVYIELLQNLFANMDKKLAYEEMQNYIRKNYSDYPFKDELQYYNNILEGNLYELKESNIKSSGYVVDTLEASIWAFLTTNSYKEAVLKAVNLGGDTDTIAFITGSLAGIYYKMEQIPVNWIDQIAKKEDILNLCNRFIESLIKQ |
| 3G9D Chain:A ((6-290)) | ----------------IRSRALGAYLGLACGDALGATVEFLTKGEIAHQYGVHKHIKGGGWLKLPAGQVTDDTEMSIHLGRAILAAPEWDARRAAEEFAVWLK-------GVPVDVGDTTRRGIRRFIMHGTLSEP--ESEYHAGNGAAMRNLPVALATLGDDAAF---ERWTVEQAHITHCNAMSDAATLTLGHMVRRLVLGGDVRDVRDESNKLIAKHRQ---FK--FQPYRGL--------------ATAYIVDTMQTVMHYYFQTDSVESCVVETVNQGGDADTTGAIAGMLAGATYGVETIPPRWLRKLDR--DVYNEICAQVDGLLAR |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3G9D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -211802 for 2661 contacts (-79.6/contact) +
2D Compatibility (PS) -29045 + (NN) -6797 + (LL) 2224
1D Compatibility (HY) -11600 + (ID) 4150
Total energy: -261170.0 ( -98.15 by residue)
QMean score : 0.440
|
|
|