Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VKKNLEQIYAIEFTMGLRYRPMQIRHNIKLIFLLLLFVTWLQGDFMNRLPGNLDITKVDMPLVLLALLCYIILYPQKMTIRFQNLQYLLYICCFQFLVFMVIRYFYSNLIYGIQNMVSLTAQTLVASYVFLLVLWILALIFFYFHFRKKLRNGDYRKDSELQKKRSNLGLKLSKGSYILIGAFFVFILSSQIVGGIMVDIMIISIEIVGIALCSMGIVIFPEQLFTAYCKFKFKEFHIEE |
2V6U Chain:A ((32-43)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SIKRKFQFSDFN--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2V6U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -460 for 23 contacts (-20.0/contact) +
2D Compatibility (PS) -1255 + (NN) 890 + (LL) 22724
1D Compatibility (HY) -400 + (ID) 200
Total energy: 21299.0 ( 926.04 by residue)
QMean score : -0.202
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