Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKLPPEADYLNDETLEVYE--NDKKKYDQTNQLITNNSVTILLGDFCYYESAWSSRWRDNRFWIGSKVS
2SAK Chain:A ((65-98))
-------ELDPSAKIEVTYYDKNKKKEETKSFPITEKGFVV----------------------------
General information:
TITO was launched using:
RESULT:
Template:
2SAK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2547 for 113 contacts (-22.5/contact) +
2D Compatibility (PS) -3448 + (NN) 285 + (LL) 2016
1D Compatibility (HY) -800 + (ID) 350
Total energy: -4844.0 ( -42.87 by residue)
QMean score : 0.203
(partial model without unconserved sides chains):
PDB file :
Tito_2SAK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2SAK-query.scw
PDB file :
Tito_Scwrl_2SAK.pdb
: