Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKITAPRIPDGDLTVYPNDTYFIEDIGEVSEQIFRKTTLTGEIFEHFHLETIIFDGCVFDSVSLVSANLTDVVFKNCDLSNLDLMGAIIHRVRFENCKLIGMNFSDATLRNCVFVDCYADYVAFRYANLKWVAFEAGAYTNSDFSGAQLVDTYLERLDLNKAQFLNCALNGIDLSSCIFESITAMPQDLKGMSIDFSHAPALM---PLFGIRVK
2BM4 Chain:A ((17-164))
------------------------------------------EDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCT---------------FERTTLWHSTFAQCSMLGSVFVACR-----LRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVD----PVLWRTASLVGARV-
General information:
TITO was launched using:
RESULT:
Template:
2BM4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -179385 for 1236 contacts (-145.1/contact) +
2D Compatibility (PS) -14729 + (NN) 3589 + (LL) 4564
1D Compatibility (HY) -5200 + (ID) 2200
Total energy: -193361.0 ( -156.44 by residue)
QMean score : 0.228
(partial model without unconserved sides chains):
PDB file :
Tito_2BM4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BM4-query.scw
PDB file :
Tito_Scwrl_2BM4.pdb
: