Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VSRIDIGEIQAFLYQLRATNEPGRKTIQSIKAAVTKYVGDNSLKGKAVDASKNYYQMTYFPLCDAIIEAMDESEERLGQYIQDFHAEVDSSPDAKIDADGLYELGKMIDRIESKKEALAQRMNSGTEGQMQNYRSQLAIAYKQENILEKYLSFEQSHANFFDHLIDLVQAVQQTIRELQSNIQFNSQTGTYDLSKLNSATVSRMQQALNKSRGIKEDIIKELRDYTVLAVVYLDSNGKEQVMWLLE-RDGVGVENAELKAYLTENGKYLNPEDYTIITNEE--LNKKINQSWRDGVYYLNGNKYDGLTGGVLSTSAYVEAGKGYIDKSG---FADVVLGLGLSTAAIRGSLV--------YKKVNGPYKQNIKNRYPNEVQQGKIFDYTLENGQVKIRDGIKEVDFIIDLQGNLKVGRGHAHLSNGGDVQAAGKLKVDSNGNVRRITNESGHYTPTLGQAKNYQQIFENTGINTKNAWLETYQLDVTKSGYVDLAKLKRIDSVKLK |
| 3CIH Chain:A ((346-505)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IQSYLMNYYLFFDSESVKRTIWLLRGKDPVTSHSNTIMDYTFY--WFLSVYDYYMYSGDRHFVNQLYPRMQTMMDYVLGRTNKNGMVEGMSGDWVFVDWADGYLDKKGELSFEQVLFCRSLETMALCADLVGDKDGQQKYEKLASALKAKLEPTFWNNQKQA--------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3CIH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 7318 for 981 contacts (7.5/contact) +
2D Compatibility (PS) -15068 + (NN) -2640 + (LL) 22700
1D Compatibility (HY) -13200 + (ID) 1750
Total energy: -2640.0 ( -2.69 by residue)
QMean score : 0.248
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