Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKTTQMNSEIFQINLEKTLKEIMVAKGLQSDEIRFVIVPVEEKGKMLDG-----------SDEMMKRLVLTKENIG-NKQLVLKD-VVDVLGGLFPKAPIWINVSFLEMNG--EKAIFKLETSLRFRKPTLLRNAETGHAPFKAIT
4AIB Chain:A ((159-284))
---------------------------GLHDDEVEIVLKEIKDKGLNLDGVHFHVGSDSHNSEVFTKALTKARNTVTLAEQFGMKPYLIDIGGGFSQVAP------FEEFAATIEKTIKELEFPERTR-------------------
General information:
TITO was launched using:
RESULT:
Template:
4AIB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2642 for 410 contacts (-6.4/contact) +
2D Compatibility (PS) -8390 + (NN) -3846 + (LL) 4572
1D Compatibility (HY) -3200 + (ID) 1450
Total energy: -14956.0 ( -36.48 by residue)
QMean score : 0.333
(partial model without unconserved sides chains):
PDB file :
Tito_4AIB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AIB-query.scw
PDB file :
Tito_Scwrl_4AIB.pdb
: