Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LVQSINTKVDLTIDATAYTGLTDYGKIMIGDKGFEFFNSRDVRKFVQIPWEEVDQVIVS---VMLKGKWIPRYAIKTKRNGTYTFASKRPKEVLRKIRVYVDPANMVSSLSFFDVMKRSFRSIFSKKKNKNK
3VKS Chain:A ((72-145))
-------------------GINPQEKVKIEKEPMKLFMENGIEELAKIPIEEIDQSKLTKDDIDVRLKWLGLFHRRKNQYGRFMMRLKLPNGV---------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3VKS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6682 for 380 contacts (-17.6/contact) +
2D Compatibility (PS) -7355 + (NN) -1581 + (LL) 4512
1D Compatibility (HY) -5200 + (ID) 800
Total energy: -17106.0 ( -45.02 by residue)
QMean score : 0.326
(partial model without unconserved sides chains):
PDB file :
Tito_3VKS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VKS-query.scw
PDB file :
Tito_Scwrl_3VKS.pdb
: