Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKPRIYTMSFASVYPLYIQKAEKKDRTKEEVDEIIFWLT-GYDQDSLQQAIDQAIDFETFFAEAPKMNPNASLITGVICGYRVEEIEDKLMQQIRYLDKLVDELAKGKKMEKILRK
3PJP Chain:A ((14-116))
--------------FPFNGKQAEDYLRSKERGDFVIRQSSRGDDHLAITWKLDKDLFQHVDIQELEKENPLALGKVLVVEGQRYHDLDQIIVEYLQNKIRLLNELTSNEKFKAGTKK
General information:
TITO was launched using:
RESULT:
Template:
3PJP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 5751 for 611 contacts (9.4/contact) +
2D Compatibility (PS) -10804 + (NN) -3130 + (LL) 1264
1D Compatibility (HY) -400 + (ID) 1200
Total energy: -8519.0 ( -13.94 by residue)
QMean score : 0.075
(partial model without unconserved sides chains):
PDB file :
Tito_3PJP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PJP-query.scw
PDB file :
Tito_Scwrl_3PJP.pdb
: