Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGLMKFQLFIQPKLDVLQGNIVEYEILLRDDSAVPRFPLSELEAVLADEELYLAFSEWFSEAFLDVLKKYP--NDRFAINIAPQQLFY-IETLHWL-DKLKSESHR---ITVEMTEDIFDVPGHKRHLNANDKNAFILNKIKVIHGLGYHIAIDDVSCGLNSLERVMSYLPYIIEIKFSLIHFKNIPLEDLLLFIKAWANFAQKNKLDFVVEGIETKETMTLLESHGVSIFQGYLVNKPFPV
3GFZ Chain:A ((178-394))
------QFALQAIVEPAKKRVSSFEALIR--SPTGGSPV-EMFAAIAAEDRYRFDLESKAYAFA-LAGQLPLGKHQLAINLLPGSLYHHPDAVGWLMDSLLAAGLRPDQVLIEVTE--------TEVITCFDQFRKVLKALRVA---GMKLAIDDFGAGYSGLSLLTRFQPDKIKVDAELVRDIHISGTKQAI-VASVVRCCEDLGITVVAEGVETLEEWCWLQSVGIRLFQGFLFSRP---
General information:
TITO was launched using:
RESULT:
Template:
3GFZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111757 for 1679 contacts (-66.6/contact) +
2D Compatibility (PS) -22424 + (NN) -8848 + (LL) 832
1D Compatibility (HY) -12400 + (ID) 2850
Total energy: -157447.0 ( -93.77 by residue)
QMean score : 0.567
(partial model without unconserved sides chains):
PDB file :
Tito_3GFZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GFZ-query.scw
PDB file :
Tito_Scwrl_3GFZ.pdb
: