Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEIKVKEATLAKYATKLESKGKSTEYLP------MKGGNMSYSQANSINHFRTALFDLVDAVDNFQGVVGTDAKRLKELGASFTRKDQELERSMGLGGK
3FAV Chain:A ((12-85))
----------LAQEAGNFERISGDLKTQIDQVESTAGSLQGQWR-GAAGTAAQAAVVRFQEAANKQKQELDEISTNIRQAGVQYS---------------
General information:
TITO was launched using:
RESULT:
Template:
3FAV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2934 for 328 contacts (-8.9/contact) +
2D Compatibility (PS) -6990 + (NN) -1389 + (LL) 1824
1D Compatibility (HY) 1200 + (ID) 350
Total energy: -8639.0 ( -26.34 by residue)
QMean score : 0.340
(partial model without unconserved sides chains):
PDB file :
Tito_3FAV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FAV-query.scw
PDB file :
Tito_Scwrl_3FAV.pdb
: