Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LDKKAIFDSVSNMEEQIGELYQQLGDLKTNLGEMLEENNRL--NLENEHLRRRLSLTDEATPEPKAETEAE----HGVMAPNRKEAMQQMIELGEGYDNLVQLYKEGFHVCNVHFGSPRGNDEDCLFCLSLLNKK
5C0W Chain:K ((488-550))
--------------------------LTNGVTEHVRQNAKLLANLIRDALRNIKNTNEEATPIPSSETKADGILLETISVPQIRDVMER----------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
5C0W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 5946 for 201 contacts (29.6/contact) +
2D Compatibility (PS) -6420 + (NN) -5177 + (LL) 4076
1D Compatibility (HY) -1600 + (ID) 900
Total energy: -4075.0 ( -20.27 by residue)
QMean score : 0.465
(partial model without unconserved sides chains):
PDB file :
Tito_5C0W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5C0W-query.scw
PDB file :
Tito_Scwrl_5C0W.pdb
: