Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MVGMTRKKTLFWLCIFLLPNLLGFLIFIAIPILGSLGISFTDWDLVSTIHFTGFENYKRLFNDPEFWKSFRN----TITF--IIGYLPSVMILGLACALMLNQKIKLRPFFRAVYFLP-VITSWVAVSLVWKWLFNPSYGLINYFLSLIGIAGPNWLTDPQTAMIAVIITSAWKDIGFVMVLFLGGLQNISPSYYEAANMDGASKLRQLFSITIPLLTPTTFFVTIISLINSFQVFDQVMIMTEGG--------PSGATMTLVQNIYNHAFRYF---EMGYASAMSWILFIVIFIITIIQNKLQKRWSNY |
3PUX Chain:F ((259-503)) | ---------------------------------------------------TGWKNFTRVFTDEGIQKPFLAIFVWTVVFSLITVFLTVAVGMVLAC-LVQWEALRGKAVYRVLLILPYAVPSFISI-LIFKGLFNQSFGEINMMLSALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFEGGGGQDFGLAAAIATLIFLLVGALAI------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PUX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -170287 for 1545 contacts (-110.2/contact) +
2D Compatibility (PS) -23656 + (NN) -9884 + (LL) 5512
1D Compatibility (HY) -24800 + (ID) 3900
Total energy: -227015.0 ( -146.94 by residue)
QMean score : 0.378
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