Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSIEVGNKLQGKVTGITNFGAFVELEGGKTGLVHISEVADNYVKDINDILTVGDEVTVKVMNIG-DDGKIGLSIRKAVDRPDRPEKSYDRKPKYNKKPAGNYVKPAESFEDIMSKFLKDSDERLTTIKRQTESKRGGRGAKRG
2OCE Chain:A ((655-724))
-----GMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSMR--------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2OCE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53397 for 459 contacts (-116.3/contact) +
2D Compatibility (PS) -7271 + (NN) 1020 + (LL) 3196
1D Compatibility (HY) -8400 + (ID) 1600
Total energy: -66452.0 ( -144.78 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_2OCE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OCE-query.scw
PDB file :
Tito_Scwrl_2OCE.pdb
: