Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAIAKFFRNVSSEMHKVTWPTRKELLTYTVTVVITVVLFALFFMLIDFGIEQIIKLIV
2ZQP Chain:E ((12-44))
----------ARAELARVTWPTREQVVEGTQ----AILLFTLAFMVI------------
General information:
TITO was launched using:
RESULT:
Template:
2ZQP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10612 for 116 contacts (-91.5/contact) +
2D Compatibility (PS) -3150 + (NN) 360 + (LL) 3016
1D Compatibility (HY) -4000 + (ID) 700
Total energy: -15086.0 ( -130.05 by residue)
QMean score : 0.308
(partial model without unconserved sides chains):
PDB file :
Tito_2ZQP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZQP-query.scw
PDB file :
Tito_Scwrl_2ZQP.pdb
: