Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKGKKYQDALKQIDANKVYTAEEAVELAKKIDFAKFDATVEVAFRLGVDPKKADQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADYVGESEFVEKINQGWFDFDVIVATPDMMGEVG-KLGRVLGPKGLMPNPKTGTVTMDVTKAVNEIKAGKVEYRVDKAGNVHAAIGKVSFDAAKLVENFRTVNDVLQKAKPAAAKGTYVKNLSVTTTFGPGIKVDPASL
4F9T Chain:A ((2-229))
-PKHG--YRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTAMGPSVRINPHS-
General information:
TITO was launched using:
RESULT:
Template:
4F9T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105662 for 1829 contacts (-57.8/contact) +
2D Compatibility (PS) -24823 + (NN) -15945 + (LL) 512
1D Compatibility (HY) -18800 + (ID) 6050
Total energy: -170768.0 ( -93.37 by residue)
QMean score : 0.645
(partial model without unconserved sides chains):
PDB file :
Tito_4F9T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4F9T-query.scw
PDB file :
Tito_Scwrl_4F9T.pdb
: