Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVLEAKQSAVEEIKTKLSASASTVIVDYRGLNVGEITDLRKQLRDAGIEFKVYKNSLTRRAVEANGYEGLEGALTGPNAIAFSNEDVVAPAKILNDFAKDHEALEIKAGVIEGKVASL------EEIKALATLPSREGLLSMLCNVLQAPVRGLAIATKAVADQKEGQEA
3DBY Chain:A ((157-262))
------------------------------------------KRLKEKSEEFTKHFEQFYLKAVEMTGY--LRTELHHFPALKKFTKDVSLELKLFSHFLHEVEELELSNEVLSVLSARMADHMAREECYYLLKLAQSSGLEMPKCNPLE----------------------
General information:
TITO was launched using:
RESULT:
Template:
3DBY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5034 for 557 contacts (-9.0/contact) +
2D Compatibility (PS) -10664 + (NN) -2732 + (LL) 5312
1D Compatibility (HY) -5200 + (ID) 1500
Total energy: -19818.0 ( -35.58 by residue)
QMean score : 0.200
(partial model without unconserved sides chains):
PDB file :
Tito_3DBY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DBY-query.scw
PDB file :
Tito_Scwrl_3DBY.pdb
: