Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDEKEKNLNENSENESTPKREVEDTLHTPESAQPVQETPIVEGVTPEGEKFAGATEDAAEASSTNAFFEEASNKESEPARPAPGPRRAGTTGGGAVPPNRVNNGGSGNGNGEPPKRGKHFIGYFLTALIGVIIGGLIIFFVAWDNGDNADTTSNSNNKATKVEKVSVDTTSDVTKAVDKVQDAVVSVLNYQSSSSLDGTTTSEQEASSGSGVIYKKANGKAYIVTNNHVVADANKLEVTFTNGKKSEAKLLGTDEWNDLAVLEIDDKNVTTVAAFGDSDSLKLGEPAIAIGSPLGTEFSG--SVTQGIISGLNRAVPVDTNGDGTEDWEADVIQTDAAINPGNSGGALINIEGQVIGINSMKISMENVEGISFAIPSNTVEPIIEQLETKGEVERPSLGVSLRDVDTIPETQQKNILKLPDSVDYGAMVQQVVSGSAADKAGLKQYDVIVELNGQKVTNSMTLRKILYGNDVKIGDKVKVKYYRDGKEKS-----TDIKLEAAKTTT |
3PV3 Chain:A ((77-354)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SIGSGVIIDPNNG--VIITNDHVIRNASLITVTLQDGRRLKARLIGGDSETDLAVLKIDAKNLKSL-VIGDSDKLEVGDFVVAIGNPFGLN---SQSATFGIVSALKRS---D------ENF----IQTDAAINPGNAGGALVNAKGELIGINTAILS---V-GIGFAIPINMVKDVAQQIIKFGSIHRGLMGIFVQHLT--PELAQA--MGYPEDFQ-GALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTI--SLLRVGSTVKIIVERDNKPLTLSAVVTDIK-------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3PV3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -74937 for 2007 contacts (-37.3/contact) +
2D Compatibility (PS) -26918 + (NN) 373 + (LL) 9516
1D Compatibility (HY) -22800 + (ID) 5750
Total energy: -120516.0 ( -60.05 by residue)
QMean score : 0.521
|
|
|