Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VFIHGFQEEVGNLWQETLRHPFVRSLADGTLEKEAFYYYLLQDDYYLSHFEKVIEKSVEQAGTAELAAEMREVQVRLQQSELLMREQFYPRVGLTERDFSERKPAPTAYHYTSHLHRMVDFGSFGVTIAALLPCYALYADIGKMYEGARSSEP--FYQELLDSYVDENYQKVVLQQKRLVEQAASMADARELALMKQAFQISVEMEWAFFDMAYKKQNWRGSVNYV
2GM8 Chain:A ((21-197))
-----------GIWQRILAHPFVAELYAGTLPMEKFKYYLLQDYNYLVNFAKALSLAASRAPSVDLMKTALELAYGTVTGEMANYEALLKEVGLSLRDAAEAEPNRVNVSYMAYLKSTCALEGFYQCMAALLPCFWSYAEIAERHGGKLRENPVHVYKKWASVYLSPEYRGLVERLRAVLDSSGLSAE--------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2GM8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78089 for 1275 contacts (-61.2/contact) +
2D Compatibility (PS) -19017 + (NN) -8018 + (LL) 4848
1D Compatibility (HY) -12000 + (ID) 2700
Total energy: -114976.0 ( -90.18 by residue)
QMean score : 0.587
(partial model without unconserved sides chains):
PDB file :
Tito_2GM8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GM8-query.scw
PDB file :
Tito_Scwrl_2GM8.pdb
: