Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNRIGFIGAGNMGTAMIRGLAQANLVKREEIIVGGRNLEKLKPLEAEFTGLQITTDTEKLVEQADIIILAVKPYTIPEILTSVKEKLTPDKIIISVAAGVTIQDLEELTSAKTKIVRVMPNTPALVGEAMSSVSPNTNVTSEELKEVTAIFTSFGEAEVVSENLMDAVIGVSGSSPAYVYMFIEALADGAVLSGMPRDKAYKFAAQAVLGAAKTVLETGEHPGKLKDMVTSPGGTTIEAVKSLENDGFRSAVINAVQAAAKKNSSM |
2AMF Chain:A ((5-259)) | --KIGIIGVGKMASAIIKGLKQTP----HELIISGSSLERSKEI-AEQLALPYAMSHQDLIDQVDLVILGIKP----QLFETVLKPLHFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVSQELQARVRDLTDSFGSTFDISEKDFDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVTQTVLASASNLKTSSQSPHDFIDAICSPGGTTIAGLMELERLGLTATVSSAIDKTIDKAKSL |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2AMF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -110914 for 1862 contacts (-59.6/contact) +
2D Compatibility (PS) -27689 + (NN) -9015 + (LL) 972
1D Compatibility (HY) -22000 + (ID) 4500
Total energy: -173146.0 ( -92.99 by residue)
QMean score : 0.453
|
|
|