Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVVADYLALFAVICIWGLLLINIVLIVAGYVYYLKNEARKVPEIPVEVPFVSVMVPAHNEGK-VIVKTVESLLAFDYPVDRYEIIVINDNSSD-NSAELLAAIQAKNPTRFLKIINTDNITGGKGKSNALNIGFAESRGELVAIYDADNTPERQALRILVGEITNDAKLGAVIGKFRTRNRNASWLTRFINIE-----------------TLSFQW---------MAQAGRWALFKLCTIPGTNFIVRRSLLEEIGGWDVKAV---AEDTEISFRIYMMGYRIKF----QAKAVTWEQEPQTLPVWFKQRSRWAKGNIYVILKNVPLLFKREGRRVRFDILYFLSIYFLLLTSLIVSDVLLVLYALGLVHTTLAGLSGALWLLAILLFVAGTFITLTTEKGEISFSNLLFIMLMYVTYCQLWMVVAAYGFFIFLKDTVLKRETKWYKTERF |
| 4D0T Chain:A ((133-370)) | ---------------------------------------------VDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIEK------VRVLRNDRR---EGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAED------------RTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVGHVFRKQHPYTFP--------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4D0T.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -77590 for 1576 contacts (-49.2/contact) +
2D Compatibility (PS) -21538 + (NN) -4605 + (LL) 20880
1D Compatibility (HY) -13600 + (ID) 2900
Total energy: -99353.0 ( -63.04 by residue)
QMean score : 0.351
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