Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKKMGFILICCLFVCASPFYVKANTDKATSKAGVIFTHDPRKPKTGTD--DRSGTFPTKVPPKRL-PKTGDTADFYLVLLGVGFILIAKKGYFKEVREEIR
1GK9 Chain:B ((203-240))
-------------------------------------HDPRLPVPGTGKWDWKGLLPFEMNPKVYNPQSGYIANW--------------------------
General information:
TITO was launched using:
RESULT:
Template:
1GK9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 5258 for 100 contacts (52.6/contact) +
2D Compatibility (PS) -3908 + (NN) -5057 + (LL) 5740
1D Compatibility (HY) -1600 + (ID) 750
Total energy: -317.0 ( -3.17 by residue)
QMean score : 0.736
(partial model without unconserved sides chains):
PDB file :
Tito_1GK9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GK9-query.scw
PDB file :
Tito_Scwrl_1GK9.pdb
: