Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDFHIRKATNSDAEAIQHVAITSWHHTYQDLIPGDVQDDFLERFYNVETLHNRISATPFAVVEQADKVI----GFAN-----FIELE--KGKSELAAFYLLPEVTQRGLGTELLEVGMTLFHVP--LPMFVNVEKGNETAIHFYKAKGFVQVEEFTEDFYGYPLETIRFNLNHHAFEEE
3F0A Chain:A ((5-146))
-SIEIRKLSIEDLETLIEVARESWKWTYAGIYSEEYIESWIREKYSKEKLLNEI------VRSQSNLDILFLGAFADSTLIGFIELKIIANKAELLRLYLKPEYTHKKIGKTLLLEAEKIMKKKGILECRLYVHRQNSVGFSFYYKNGF------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3F0A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54485 for 827 contacts (-65.9/contact) +
2D Compatibility (PS) -13911 + (NN) -4467 + (LL) 2900
1D Compatibility (HY) -11200 + (ID) 2150
Total energy: -83313.0 ( -100.74 by residue)
QMean score : 0.333
(partial model without unconserved sides chains):
PDB file :
Tito_3F0A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F0A-query.scw
PDB file :
Tito_Scwrl_3F0A.pdb
: