Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLDKKIISALSYFSLFFAPVITPAIIWCTTKDKEIRHHVKWALLTQATFVAGIVVMILLYNNVPFSTNSADTINFLALATVFFIVFLNVSILIFNLIRGITRIVKHS-DDNWARC
3PNW Chain:C ((21-37))
--------------------------------------------------------------------------------------------------GDECFALYWEDNKFYRA
General information:
TITO was launched using:
RESULT:
Template:
3PNW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3656 for 55 contacts (-66.5/contact) +
2D Compatibility (PS) -1915 + (NN) -1728 + (LL) 9856
1D Compatibility (HY) 400 + (ID) 150
Total energy: 2807.0 ( 51.04 by residue)
QMean score : 0.310
(partial model without unconserved sides chains):
PDB file :
Tito_3PNW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PNW-query.scw
PDB file :
Tito_Scwrl_3PNW.pdb
: