Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFDDSKPIYKQIVHYIHTEIVTGTYEAGDKLLSVRELATKLEVNPTTIQRAYAELEETEIIYTVRGTGKYLTEDKRRI--EQLENDIAKQLTENFISEMSKLGINKEKIIAWVKKVEEVEVNVSGK
2DU9 Chain:A ((4-115))
-------PLYKQIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYKKRGIGMFVSAQAPALIRERRDAAFAATYVAPLIDESIHLGFTRARIHALLDQVAE--------
General information:
TITO was launched using:
RESULT:
Template:
2DU9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44062 for 687 contacts (-64.1/contact) +
2D Compatibility (PS) -11739 + (NN) -1904 + (LL) 752
1D Compatibility (HY) -8000 + (ID) 1700
Total energy: -66653.0 ( -97.02 by residue)
QMean score : 0.578
(partial model without unconserved sides chains):
PDB file :
Tito_2DU9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DU9-query.scw
PDB file :
Tito_Scwrl_2DU9.pdb
: