Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNINMKVARVEKDISQEELAKLIHVSRQTISSVEAGNYNPTLNLCIAICKALGKTLDDLF-WEEDDNV
2LYP Chain:A ((5-66))
----NLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIFQWQPE---
General information:
TITO was launched using:
RESULT:
Template:
2LYP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35020 for 412 contacts (-85.0/contact) +
2D Compatibility (PS) -6695 + (NN) -3756 + (LL) 432
1D Compatibility (HY) -6400 + (ID) 1450
Total energy: -52889.0 ( -128.37 by residue)
QMean score : 0.650
(partial model without unconserved sides chains):
PDB file :
Tito_2LYP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LYP-query.scw
PDB file :
Tito_Scwrl_2LYP.pdb
: