Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIRLARIDDRLIHGQVATVWTKETQVERIIVISDDVAKDEVRKTLLTQVAPPGVKASVVDVQKGIRVYNNPKYATTPVMLLFTNPTDVLTLVEAGVNITTVNIGGMAFREGKHMITNAVSVDETDEAAFRKLDEK-GIELEIRKVASDNKVKLIPLLDKDK
3LFJ Chain:A ((3-161))
-KIVFARIDDRLIHGQVMTRWMKGFPEASIVIIDDELAVDEFMKNIYTMAAPPGVKVKVFGVDAALKEWSQKTSVEEKVFLLFKNIDTCKRVMDGGLPITTLNIGGVAKTPQRKGISQSVSLSEDEVKTLLELKTKYNVDVYLQMIPDSEKIHLTTVVEK--
General information:
TITO was launched using:
RESULT:
Template:
3LFJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105717 for 1195 contacts (-88.5/contact) +
2D Compatibility (PS) -16861 + (NN) -3837 + (LL) 196
1D Compatibility (HY) -15200 + (ID) 2750
Total energy: -144169.0 ( -120.64 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_3LFJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LFJ-query.scw
PDB file :
Tito_Scwrl_3LFJ.pdb
: