Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVLFIKASPLPNEVSRSSQVAETFMAEYKAKNPSDTVEELVLYNTEVPLLDLELMTAGRELQAGKAFTDLAPDVQKKLNAYNALTEQFLAADKYVFVFPLWNLGIPPLLKAYIDTFVIAGKSFRYTEHGPEALLKDKKAILIHGSGGIYSAGPTSSFTHGEPYLRTILQFIGINVVPSIFVEGIDHNPSKEAEIVAAAKAVAQESATEF
1V4B Chain:A ((1-192))
-SKVLVLKSSILAG-YSQSNQLSDYFVEQWREKHSADEITVRDLAANPIPVLDGELVGALR---A-----PLTPRQQEALALSDELIAELKAHDVIVIAAPMYNFNISTQLKNYFDLVARAGVTFRYTENGPEGLVTGKKAIVITSRGGIHKDGPTDLVT---PYLSTFLGFIGITDVKFVFAEGIAYGPEMAAKAQSDAKA---------
General information:
TITO was launched using:
RESULT:
Template:
1V4B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116228 for 1432 contacts (-81.2/contact) +
2D Compatibility (PS) -20939 + (NN) -5893 + (LL) 1872
1D Compatibility (HY) -14000 + (ID) 3950
Total energy: -159138.0 ( -111.13 by residue)
QMean score : 0.681
(partial model without unconserved sides chains):
PDB file :
Tito_1V4B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V4B-query.scw
PDB file :
Tito_Scwrl_1V4B.pdb
: