Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDILRDIGVIARALDSISNIEFKELNLAKGQFIYLVRICEN-QGIIQEKLVDILKIDRTTASRAIKNLEKNGLIIKKQNKNNKKNKLLFPTEKGQQLYPLIIRENEYSNAVALKGFTEAEINMLTDALKKVKENIADDWLYVKKGNKRSY
5CYV Chain:A ((40-139))
--------------------------------YSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTL-----RNKLIAATEEGRRLRDDAKARVDAAHGRYFEGIPDTVVNQMRDTLQSI-------------------
General information:
TITO was launched using:
RESULT:
Template:
5CYV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42817 for 588 contacts (-72.8/contact) +
2D Compatibility (PS) -10166 + (NN) -1245 + (LL) 3512
1D Compatibility (HY) -4000 + (ID) 1100
Total energy: -55816.0 ( -94.93 by residue)
QMean score : 0.520
(partial model without unconserved sides chains):
PDB file :
Tito_5CYV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5CYV-query.scw
PDB file :
Tito_Scwrl_5CYV.pdb
: