Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VSKNVKKIVITLFALIMTVGLASGFIAPIKASADTNNFTVKVEYVDADGAEIAPSDILT---DYHYVSTPKDIPGYKLREIPHNATGNITDTGIIVRYIYDKTIDVRYVDETGKDLLPVVEIINSEAAVLETISDYTFVKKDISIDGLHIIFRYKKNISTIPDFGKPNQVTVNYLDENKTPIAPSLYLSGLFNEAYNVPMKKIKGYTLLKYDSEILGVFTESPQTINIIYQKKAPEQAPSMEPLPDPTVPESPQVEKSKIKKSKIETTEKRTTSKVKIAPKALKLTKVEQKKQETKDSLPKTGDSSVNLLITCLGIIAISCGVYLLVQQSQKRRRKE |
2KVZ Chain:A ((6-72)) | ------------------------------------PNQVTVNYLDENNTSIAPSLYLSGLFNEAYNVPMKKIKGYTLLKYDSEILGVFTESPQTINIIYQKK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2KVZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -14223 for 390 contacts (-36.5/contact) +
2D Compatibility (PS) -7100 + (NN) -4859 + (LL) 18540
1D Compatibility (HY) -4800 + (ID) 1000
Total energy: -13442.0 ( -34.47 by residue)
QMean score : 0.361
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