Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTFWQDMMNFFSYDNLMYWLSEYRNLGPLLAFLLPFIEAFLPFLPFIVFVVVNVNAYGLLIGFLISVIAAIAGSLCVFLLARKFGQTRFLRFISGHKQIKRVMEWIDRHGFSPIFILLVMPFTPSSAVNIVAGLSKIKVYQFILALV--GGKLIKVFA-------ISYIGYDFVDLIHQPLKLAILAVSVVILWFVGKRLEHWMSGKNLK
4PON Chain:A ((7-197))
------MILKKILPYSKELLKMAAGEGD------IVIDATMGNGHDTQFLAELVGENGHVYAFDIQ-------ESAVANTKERLGEAYQARTTLFHKSHDKIAKSLPPETHGKVAAAVFNLGNGSSTIKAIEQLLSIMKDEGLIVLVVYHGNDVLDFCRNLDQQAARVLTYGFINQQNDP--------PFIVAIEKKAQ-----------
General information:
TITO was launched using:
RESULT:
Template:
4PON.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -226042 for 1280 contacts (-176.6/contact) +
2D Compatibility (PS) -16823 + (NN) -1779 + (LL) 4420
1D Compatibility (HY) 2800 + (ID) 1300
Total energy: -238724.0 ( -186.50 by residue)
QMean score : 0.260
(partial model without unconserved sides chains):
PDB file :
Tito_4PON.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PON-query.scw
PDB file :
Tito_Scwrl_4PON.pdb
: