Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTNLFQDDSLTLHTDLYQLNMMKAYFDDGLHERRSVFEVFFRDMPFDSGFVVFAGLERIIHYMQNLRFTETDIAYLHDELGFDGPFLEYLRNFKFKGNILAAKEGEFVFKTE------PILQVEASLAEAQLIETALLNIVNFQTLIATKAARIRSVIDDETFAEFGTRRAQEMDAAIWGTRAAYIGGCDSTSNVRAGKIFGIPVSGTMAHAMVQAYRDELEAFR---SYAKTHFDSIFLVDTYDTLKSGVPNAIKVAKEMGDKINFIGIRLDS-----GDMAFLSKKARQMLDEAGFTEAKIFASSDLDEHTILSLKAQKAKIDSWGVGTKLITAYDQPALGAVYKMAAIADENDILQDSIKLSSNTEKVSTPGKKKVYRIITNEDGLKAEGDYIALADESLENVDKLTMFHPVHTYIMKTVENFTARELLVPIFQNGELVYDMPSLDEIKAYKEENLALLWDEYKRTVRPEQYPVDLSVKCWKNKMRNIEKVRKSVQLHSPVELDMPF |
| 1YTK Chain:A ((76-304)) | -------------------------------------------------------------------------------------------------DLYAIPEGTILFPRDANGLPVPFIRVEGRYCDFGMYETAILGFICQASGISTKASKVRLAAGDSPFFSFGIRRMHPAISPMI-DRSAYIGGADGVSGILGAKLIDQDPVGTMPHALSIMLGDE-EAWKLTLENTKNGQKSVLLIDTYMDEKFA---AIKIA-EMFDKVDY--IRLDTPSSRRGNFEALIREVRWELALRGRSDIKIMVSGGLDENTVKKLR--EAGAEAFGVGTSISSA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YTK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -87428 for 1625 contacts (-53.8/contact) +
2D Compatibility (PS) -23313 + (NN) -8092 + (LL) 19908
1D Compatibility (HY) -14000 + (ID) 3900
Total energy: -116825.0 ( -71.89 by residue)
QMean score : 0.372
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