Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKKMMVMGSVGCGKTTLCQ----KLHGYDILY---KKTQAVEYFQEMID-----TPGEFVQHRQLYSALTVTAADASVIAILQSVTEKKQTFSPMFASI-FA---KPVIGI---VTKVDLAESDKDIERAER-----------ELRMAGAKHIFYISSVEETGIEELRAYLED
4ARZ Chain:B ((12-190))
---VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVD-AQRDIMQRTGEELLELGLDGVQVSFYLTSIFDHSIYE-------
General information:
TITO was launched using:
RESULT:
Template:
4ARZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32616 for 774 contacts (-42.1/contact) +
2D Compatibility (PS) -13425 + (NN) 2971 + (LL) 1120
1D Compatibility (HY) -10800 + (ID) 1850
Total energy: -54600.0 ( -70.54 by residue)
QMean score : 0.213
(partial model without unconserved sides chains):
PDB file :
Tito_4ARZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ARZ-query.scw
PDB file :
Tito_Scwrl_4ARZ.pdb
: