Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LEKEKVVNIQPLMDSQVESQFTQQIQEDFNKKNPDHSALLHSLETVEVLDVLSDYYTAHEKQKQPPKETTSPSKSNGEHKEIKQAIRYIKKNIHRSITLEEVANHVYLSPFYLSKLFKNELNINFINYVNEQKMLYAKEQLEKSDWAVHTIAKNLGFSRASYFCKVFKKEFKMTPKEYRDSLK
1XS9 Chain:A ((7-113))
------------------------------------------------------------------------SRRNTDAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKNYFDVPPHKYR----
General information:
TITO was launched using:
RESULT:
Template:
1XS9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41790 for 716 contacts (-58.4/contact) +
2D Compatibility (PS) -10970 + (NN) -3259 + (LL) 5016
1D Compatibility (HY) -6000 + (ID) 1350
Total energy: -58353.0 ( -81.50 by residue)
QMean score : 0.599
(partial model without unconserved sides chains):
PDB file :
Tito_1XS9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XS9-query.scw
PDB file :
Tito_Scwrl_1XS9.pdb
: