Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFPVKDFLAATSVGVLEEGGTVLDLNYVEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKETLGDKVTARIKGE
1UDO Chain:A ((2-234))
-RSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWITAEYSMLPRATQQRTIRESVQGRIGGATHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQADGGTRTAAITGAFVAVADAIIKLHKEGIIEETPIKDFVAAVSVGIVND-RILLDLNFEEDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQKK-------------
General information:
TITO was launched using:
RESULT:
Template:
1UDO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131444 for 1951 contacts (-67.4/contact) +
2D Compatibility (PS) -25167 + (NN) -9431 + (LL) 768
1D Compatibility (HY) -22400 + (ID) 6650
Total energy: -194324.0 ( -99.60 by residue)
QMean score : 0.521
(partial model without unconserved sides chains):
PDB file :
Tito_1UDO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UDO-query.scw
PDB file :
Tito_Scwrl_1UDO.pdb
: