Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKSNTFLLITILVGLVFISFGCSEEKETPKKTAKEVQGVQIKTKEFQRVVGWLSKDSVLLQTKKSG---VTYFEELNIYNEKKRPIFNTKESISEVQISPDYRNILLYSAESAEKATMRIIALNDGSTVASRATKPLTTTFYWNDESPEKIMFVTYSPEWNFQIENWDYTLDQLDKID---VASPFISWYGDNLVISNNKDKPDDELGNLYLQDIRDSATKNLIVANIMQFAVHDNVLLTIEKNSDEKLLYDFRTLGFQNFFSYNAAREYDELGTFVPYFDTNFDKNTFLTFVPYKSAKIGSGAKEYKLVKIDPTNKKESTILELMDNQPILSYETGDLVLYGYL-----FDKVIDTKTGKMYNLINTPTKSF |
2HQS Chain:A ((145-395)) | ---------------------------------------------------------RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFA-LS-KTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQ--AGRPQVYKVNINGGAP-QRI---------------------------TWEGS--------------QNQD-----ADVSSDGKFMVMVSSNG--------GQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARL-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2HQS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -45811 for 1884 contacts (-24.3/contact) +
2D Compatibility (PS) -25247 + (NN) -4841 + (LL) 8928
1D Compatibility (HY) 800 + (ID) 1350
Total energy: -67521.0 ( -35.84 by residue)
QMean score : 0.400
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