Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKGHRHIIIRELITSNEIDTQEDLVELLLERDVKVTQATVSRDIKELHLVKVPTQTGGYK-YSLPADNS-----FNPHQKLKRALIDCFIGIDNVQFMIILKVMPGNGNSVGALIDNLDWPEKAGTICGDDTCLIICRSEENAKTLTDRFIDML
3ERE Chain:D ((17-166))
-NRAGRQARIVAILSSAQVRSQNELAALLAAEGIEVTQATLSRDLEELGAVKLRGADGGTGIYVVPEDGSPVRGVSGGTDRMARLLGELLVSTDDSGNLAVLRTPPGAAHYLASAIDRAALPQVVGTIAGDDTILVVAREPTTGAQLAGMF----
General information:
TITO was launched using:
RESULT:
Template:
3ERE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77620 for 1043 contacts (-74.4/contact) +
2D Compatibility (PS) -16249 + (NN) -10629 + (LL) 720
1D Compatibility (HY) -6400 + (ID) 2300
Total energy: -112478.0 ( -107.84 by residue)
QMean score : 0.421
(partial model without unconserved sides chains):
PDB file :
Tito_3ERE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ERE-query.scw
PDB file :
Tito_Scwrl_3ERE.pdb
: