Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LYDYIKGTVTTITPEYIVVEAGQIGYQIITGNPFSFQRL-EGTEAQVFLYQHVREDNISLFGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKTARQIILDLKGKLADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRELKKVIPK-LAKEADLTSDAYIKLALQLMTK
2ZTC Chain:A ((21-210))
----VRGEVLEVALDHVVIEAAGVGYRV-NATPATLATLRQGTEARLITAMIVREDSMTLYGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDKV---------------HAV--RSPVVE----ALVGLGFAAKQAEEATDTVLAANHDATTSSALRSALSLLGK
General information:
TITO was launched using:
RESULT:
Template:
2ZTC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108534 for 1252 contacts (-86.7/contact) +
2D Compatibility (PS) -19184 + (NN) -6486 + (LL) 2456
1D Compatibility (HY) -10800 + (ID) 3100
Total energy: -145648.0 ( -116.33 by residue)
QMean score : 0.574
(partial model without unconserved sides chains):
PDB file :
Tito_2ZTC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZTC-query.scw
PDB file :
Tito_Scwrl_2ZTC.pdb
: