Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VENTIVIKLGGVA--SDNLTEGFFRQITEWQAANKKIVLVHGGGHYITKMMEALAIPVETKNGLRVTNKATLEVTKMVLIGQVQPAITTAFQKRNISVIGLNASDTGLLEADRLSDT-DLGLVGKITKVKTNLIEQLLSENIITVIAPLGINSEHDWLNVNADTAACEVASALHAEALYLLTDVPGV----KNGSEIIGEIATAEIEKLQSTGVIKGGMIPKLASAAFAAENGVGQVIITDSLNNSGTKIKNKVAIG
2RD5 Chain:A ((38-275))
---TIVVKYGGAAMTSPELKSSVVSDLVLLACVGLRPILVHGGGPDINRYLKQLNIPAEFRDGLRVTDATTMEIVSMVLVGKVNKNLVSLINAAGATAVGLSGHDGRLLTARPVPNSAQLGFVGEVARVDPSVLRPLVDYGYIPVIASVAADDSGQAYNINADTVAGELAAALGAEKLILLTDVAGILENKEDPSSLIKEIDIKGVKKMIEDGKVAGGMIPKVKCCIRSLAQGVKTASIID----------------
General information:
TITO was launched using:
RESULT:
Template:
2RD5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -175456 for 1854 contacts (-94.6/contact) +
2D Compatibility (PS) -25420 + (NN) -7277 + (LL) 740
1D Compatibility (HY) -22000 + (ID) 4150
Total energy: -233563.0 ( -125.98 by residue)
QMean score : 0.529
(partial model without unconserved sides chains):
PDB file :
Tito_2RD5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RD5-query.scw
PDB file :
Tito_Scwrl_2RD5.pdb
: