Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNLESVEQFNAIKSEGKSVFM-FSADWCGDCKFIEPVMPEIEAENEDFSFYHVDRDEFIDLCADLAIFGIPSFLAFEDGEEVGRFVSKDRKTKEEINDFLAAI
4CW9 Chain:A ((5-99))
--HINALDQLTALLSTEKVIVIDFFATWCGPSRSISPYFEELAGQYNNIKFVKVDVDQAEEICVNYKVRSMPTFVLVKDGIEQKRFSGADRNALKQM-------
General information:
TITO was launched using:
RESULT:
Template:
4CW9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41517 for 634 contacts (-65.5/contact) +
2D Compatibility (PS) -10177 + (NN) -5140 + (LL) 916
1D Compatibility (HY) -8400 + (ID) 1300
Total energy: -65618.0 ( -103.50 by residue)
QMean score : 0.624
(partial model without unconserved sides chains):
PDB file :
Tito_4CW9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CW9-query.scw
PDB file :
Tito_Scwrl_4CW9.pdb
: