Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILLIDNYDSFTFNLEQYLAEF---SEVVVKRNDAADLIKIAALADGIVLSPGPGKPSDAGLLEEV--VAKFAKEK--PLLGICLGHQAIGEVFGGEVKRAAKIRHGKVSTMRQTAGAIFANLPEEMPVMRYHS-LIVDKNTLPDVLEVLAIATDDSEVMAMKVKDYPVYGLQFHPESIGTNDGKQMMENFIHIVEGARENGNLTTKSI
2A9V Chain:A ((16-204))
-IYVVDNGGQWTHREWRVLRELGVDTKIVPNDIDSSELDGL----DGLVLSGGA--PNIDEELDKLGSVGKYIDDHNYPILGICVGAQFIALHFGASVVKAKHPEFGKTKVSVMHSENIFGGLPSEITVWENHNDEIIN---LPDDF-TLAASSATCQVQGFYHKTRPIYATQFHPEVEHTQYGRDIFRNFIGICASYRE---------
General information:
TITO was launched using:
RESULT:
Template:
2A9V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98664 for 1532 contacts (-64.4/contact) +
2D Compatibility (PS) -19123 + (NN) -5712 + (LL) 1036
1D Compatibility (HY) -11600 + (ID) 3150
Total energy: -137213.0 ( -89.56 by residue)
QMean score : 0.445
(partial model without unconserved sides chains):
PDB file :
Tito_2A9V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2A9V-query.scw
PDB file :
Tito_Scwrl_2A9V.pdb
: