Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNIMLVCSAGMSTSLLVKKMTEAIEKQQVDATVIAVAEADFDKYKGNVDVVLLAPQVRFLEKNLKRVLDPLGIPVAIINGIDYGTMDGEKVLNDALAMIEK
1H9C Chain:A ((5-93))
--HIYLF-SAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGPQIAYMLPEIQRLLP--NKPVEVIDSLLYGKVDGLGVL---------
General information:
TITO was launched using:
RESULT:
Template:
1H9C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79472 for 628 contacts (-126.5/contact) +
2D Compatibility (PS) -9456 + (NN) -3255 + (LL) 1108
1D Compatibility (HY) -9600 + (ID) 1900
Total energy: -102575.0 ( -163.34 by residue)
QMean score : 0.500
(partial model without unconserved sides chains):
PDB file :
Tito_1H9C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1H9C-query.scw
PDB file :
Tito_Scwrl_1H9C.pdb
: