Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTERGLLIVLSGPSGVGKGTVREAVFK-DPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTPPDLSELKNRIIGRGTESMEVVEERMETAKKEIEMMASYDYAVVNDVVANAVQKIKGIVETEHLKTERVIHRYKKMLEGLQ
2F3R Chain:A ((3-204))
---QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPPSKIELDRRLRG----SEEVIAKRMAQAVAEMSHYAEYDYLIVNDDFDTALTDLKTIIRAERLRMSRQKQRHDALISKL-
General information:
TITO was launched using:
RESULT:
Template:
2F3R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75818 for 1430 contacts (-53.0/contact) +
2D Compatibility (PS) -21707 + (NN) -13093 + (LL) 568
1D Compatibility (HY) -12800 + (ID) 4100
Total energy: -126950.0 ( -88.78 by residue)
QMean score : 0.536
(partial model without unconserved sides chains):
PDB file :
Tito_2F3R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2F3R-query.scw
PDB file :
Tito_Scwrl_2F3R.pdb
: