Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKTFQLVATAASGLEAIVGKEVA----RLGYDPKVENGKVYFEG-------------------DLSAIARANLWLRVADRVKIVVGV--FKATTFDELFEKTK-------ALPWEDYLPLDAQFPVAGKSVKSTLYSVP--DCQAIVKKAIVNRVSEKYRRSGRLMETGALFKLEVSILKDEVTLTIDTSG-AGLHKRGYRLAQGSAPIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQIWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADF-QTEDEYGVVVANPPYGERLEDEEAVRQLYRE-MGIVYKRMPTWSVYVLTSYELFEEVY---GKKATKKRKLYNGYLRTDLYQYWGPRKPRPKKED |
| 3TM5 Chain:A ((1-362)) | ---MKFLLTTAQGIEDIAKREVSLLLKKLGISFQIEEKPLGIEGRLLLEAEKAYYVDEKGRKRELSISTYLNENSRLLHRVIIEIASEKFNGIEKDESEEALKRIKDFVSSLPVEQFVKVSETFAV--RSFRKGDHNITSIDIARTVGEAIFERLSRFGTPLVNLDHPAVIFRAE--LIKDVFFLGIDTTGDSSLHKRPWRVYDHPAHLKASIANAMIELAELDGG-SVLDPMCGSGTILIELAL----------RRYSGEII----------------GIEKYRKHL--IG----------AEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLPYGLKIG-KSMIPDLYMKFFNELAKVLEKRGVFITTEKKAIEEAIAENGFEIIHHRVIGHGGLMVHLY-------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TM5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -138371 for 2580 contacts (-53.6/contact) +
2D Compatibility (PS) -34435 + (NN) -12828 + (LL) 3252
1D Compatibility (HY) -21600 + (ID) 5100
Total energy: -209082.0 ( -81.04 by residue)
QMean score : 0.420
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