Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKWKKSLAGLSSYKPGKREEEVMAELGLTKITKLSSNENPLGTSPKVAALQANSNVETEIYPDGWASSLRKEVTNFYQLEEEELIFTAGVDELIELLTRVLLDTTKNTVM-ATPTFVQYRQNALIEGAEVREIPLLTDGAHDLEGMLNAIDEKTTIVWICNPNNPTGNYIDLADIQAFLDKVPSDILVVLDEAYIEYVTPQPKKHEKLIRTYKNLIITRTFSKIYGLASARVGYGIADKEIINQLNIVRPPFNTTSIGQKLAIEAIKDQAFIEACRISNANGIKQYEAFAKRFEQV----KLYPANGNFVLIDLGIEARTIFSYLEKNGYITR-SGAALGFPTAVRITIGKEEENSAVIALLEKLL |
| 1GEX Chain:A ((11-351)) | ---RENVRNLTPYQ---------------GDVWLNANEYPTAVEFQLTQQTLNR------YPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTLDNWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEF-CPQASLAGWLAE-YPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAPYPLSTPVADIAAQALSPQGIV-AMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFKASS-AVFKSLWDQGIILRDQNKQPSLSGCLRITVGTREESQRVIDAL---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GEX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -166962 for 2701 contacts (-61.8/contact) +
2D Compatibility (PS) -36108 + (NN) -17821 + (LL) 3120
1D Compatibility (HY) -22400 + (ID) 4800
Total energy: -244971.0 ( -90.70 by residue)
QMean score : 0.533
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