Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQTYVMVKPDGVERGLIGEIVTRIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFEDLIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEADPGTIRADYAIHTNRNVIHGSDSPESAQREIQLFFAPDEILSYQKAVDTWI
3VVT Chain:A ((1-139))
MERTFVMIKPDGVQRGLIGEIISRFERKGLKIVAMKMMRISREMAEKHYAEHREKPFFSALVDYITSGPVVAMVLEGKNAVEVVRKMVGATNPKEAAPGTIRGDFGLDVGKNVIHASDSPESAEREISLFFKDEELVEW--------
General information:
TITO was launched using:
RESULT:
Template:
3VVT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74960 for 1066 contacts (-70.3/contact) +
2D Compatibility (PS) -14851 + (NN) -3736 + (LL) 856
1D Compatibility (HY) -17200 + (ID) 4400
Total energy: -114291.0 ( -107.21 by residue)
QMean score : 0.532
(partial model without unconserved sides chains):
PDB file :
Tito_3VVT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VVT-query.scw
PDB file :
Tito_Scwrl_3VVT.pdb
: