Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKKICIAIDGPAAAGKSTVAKIVAKKLRFVYIDTGAMYRAVTYIALKNNIAYEDEKAIAALLQKTVIRF--EPGEVQQVFVGSENVTEVIRSIEVTNHVSIVAAHPSIREALQERQQVFATEGGIVMDGRDIGTAVLPNAELKIFLLASVEERAERRYKENMAKGFTGDLDQLKKEIEERDHLDYTRTHSPLKKADDAIEVDTTSMSIDQVANKILSLAELKINN
2CMK Chain:A ((8-223))
------ITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG-EDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRMLQLQEKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTTLSIEQVIEKALQYARQK---
General information:
TITO was launched using:
RESULT:
Template:
2CMK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119726 for 1658 contacts (-72.2/contact) +
2D Compatibility (PS) -23421 + (NN) -11109 + (LL) 664
1D Compatibility (HY) -12800 + (ID) 4650
Total energy: -171042.0 ( -103.16 by residue)
QMean score : 0.606
(partial model without unconserved sides chains):
PDB file :
Tito_2CMK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CMK-query.scw
PDB file :
Tito_Scwrl_2CMK.pdb
: