Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNWTIWDKSQKVPYTLLLEAD--PSEKQIA-KYLDKSHVFQLM---HDDIVIGIICLFPLNNDQLEIMNIAVSSDYRNQGIGKKLLEKAFDYAIHKHFIKIIVKTGNSSIDQLAFYQKNGFRMQHIIPNYFTENYPNQTITENGIVCLDQIILLKEIKS
3D8P Chain:A ((25-138))
---------QKNEFNIKIDRDDQPDLENIEHNYLNSGGQFWLAINNHQNIV-GTIGLIRLDNNMSALKKMFVDKGYRNLKIGKKLLDKVIMTCKEQNIDGIYLGTIDKFISAQYFYSNNGFR-------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3D8P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60954 for 672 contacts (-90.7/contact) +
2D Compatibility (PS) -11490 + (NN) -4845 + (LL) 3712
1D Compatibility (HY) -7200 + (ID) 1850
Total energy: -82627.0 ( -122.96 by residue)
QMean score : 0.531
(partial model without unconserved sides chains):
PDB file :
Tito_3D8P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D8P-query.scw
PDB file :
Tito_Scwrl_3D8P.pdb
: