Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKNYKAYLIDLDGTMYRGAEVIPEAIIFIENLKRAGLPYLFVTNNSTKTPGQVAEHLT-DMGIQAVSDDVFTTSQATVQFMMEQKREKTVYVIGERGIKQELTDNGFEITSSNPAFVVVGLDREVDYEKFSKAALAVRGGAMFISTNGDAAIPTERGLLPGNGSITSVVSVATETAPIFIGKPESIIMEQALAKLGVHKDEAIMVGDNYETDIMAGINYGMDTLIVHTGFTSKEALLTKEIQPTYAVTKLTDWEFN
1YDF Chain:A ((3-255))
---YKGYLIDLDGTIYKGKDRIPAGETFVHELQKRDIPYLFVTNNTTRTPESVKEMLAQNFNIDTPLSTVYTATLATIDYMNDLGLEKTVYVVGEAGLKEAIKAAGYVEDKEKPAYVVVGLDWQVDYEKFATATLAIQKGAHFIGTNPDLNIPTERGLLPGAGSLITLLEVATRVKPVYIGKPNAIIMDKAVEHLGLEREELIMVGDNYLTDIRAGIDNGIPTLLVTTGFTKAEEVAGLPIAPTHVVSSLAEWDFD
General information:
TITO was launched using:
RESULT:
Template:
1YDF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147905 for 2180 contacts (-67.8/contact) +
2D Compatibility (PS) -27395 + (NN) -10366 + (LL) 160
1D Compatibility (HY) -26400 + (ID) 6350
Total energy: -218256.0 ( -100.12 by residue)
QMean score : 0.602
(partial model without unconserved sides chains):
PDB file :
Tito_1YDF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YDF-query.scw
PDB file :
Tito_Scwrl_1YDF.pdb
: