Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKHIVLIVVACITVIAVFMYIVQINNSELKYQNRAQIKIASQMASQNEQTDNSIVSEITYK
2KNC Chain:B ((698-705))
------LSVMGAIL------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2KNC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1687 for 22 contacts (-76.7/contact) +
2D Compatibility (PS) -615 + (NN) 2312 + (LL) 5360
1D Compatibility (HY) -800 + (ID) 150
Total energy: 4420.0 ( 200.91 by residue)
QMean score : 0.604
(partial model without unconserved sides chains):
PDB file :
Tito_2KNC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KNC-query.scw
PDB file :
Tito_Scwrl_2KNC.pdb
: